Workflows
What is a Workflow?Filters
Query
Created At
Updated At
Tool
NCBI Datasets2
BUSCO8
Merqury6
Bwa-mem25
gfastats5
Minimap24
fastp3
GenomeScope 2.03
purge_dups3
BEDTools2
BRAKER12
Diamond2
HiCExplorer2
Picard2
RepeatMasker2
RepeatModeler2
RSeQC2
Smudgeplots2
SRA Software Toolkit2
AGAT1
Bandage1
BLAST1
Cutadapt1
FastQC1
funannotate1
Hifiasm1
HISAT21
Mash1
Meryl1
MitoHiFi1
MultiQC1
OMArk1
PretextView1
protexcluder1
QUAST1
SAMtools1
STAR1
StringTie1
TaxonKit1
YaHS1
More...
Workflow type
Galaxy2
Submitter
Diego De Panis2
Team
ERGA Assembly2
Space
ERGA2
Creator
Diego De Panis2
Collection
Genome Evaluation for ERGA-BGE Reports2
Topic annotations
Genomics2
Operation annotations
Genome assembly2
Maturity
Stable2
Stable
Assembly Evaluation for ERGA-BGE Reports
One Assembly, Illumina WGS reads + HiC reads
The workflow requires the following:
- Species Taxonomy ID number
- NCBI Genome assembly accession code
- BUSCO Lineage
- WGS accurate reads accession code
- NCBI HiC reads accession code
The workflow will get the data and process it to generate genome profiling (genomescope, smudgeplot -optional-), assembly stats (gfastats), merqury stats (QV, completeness), BUSCO, snailplot, contamination blobplot, and ...
Stable
Assembly Evaluation for ERGA-BGE Reports
One Assembly, HiFi WGS reads + HiC reads
The workflow requires the following:
- Species Taxonomy ID number
- NCBI Genome assembly accession code
- BUSCO Lineage
- WGS accurate reads accession code
- NCBI HiC reads accession code
The workflow will get the data and process it to generate genome profiling (genomescope, smudgeplot -optional-), assembly stats (gfastats), merqury stats (QV, completeness), BUSCO, snailplot, contamination blobplot, and HiC ...
