Workflows
What is a Workflow?Filters
Query
Created At
Updated At
Tool
gfastats2
BUSCO3
BEDTools2
Bwa-mem22
Diamond2
fastp2
GenomeScope 2.02
HiCExplorer2
Merqury2
NCBI Datasets2
Picard2
RSeQC2
Smudgeplots2
SRA Software Toolkit2
AGAT1
Cutadapt1
Minimap21
OMArk1
More...
Workflow type
Galaxy2
Submitter
Diego De Panis2
Team
ERGA Assembly2
Space
ERGA2
Creator
Diego De Panis2
Collection
Genome Evaluation for ERGA-BGE Reports2
ERGA Assembly Galaxy HiFi & HiC Pipelines (Hifiasm-solo + Purge_Dups + YaHS)3
Topic annotations
Genomics2
Operation annotations
Genome assembly2
Maturity
Stable2
2
Workflows matching the given criteria:
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Tool:
gfastats2
Collection:
Genome Evaluation for ERGA-BGE Reports2
Stable
Assembly Evaluation for ERGA-BGE Reports
One Assembly, Illumina WGS reads + HiC reads
The workflow requires the following:
- Species Taxonomy ID number
- NCBI Genome assembly accession code
- BUSCO Lineage
- WGS accurate reads accession code
- NCBI HiC reads accession code
The workflow will get the data and process it to generate genome profiling (genomescope, smudgeplot -optional-), assembly stats (gfastats), merqury stats (QV, completeness), BUSCO, snailplot, contamination blobplot, and ...
Stable
Assembly Evaluation for ERGA-BGE Reports
One Assembly, HiFi WGS reads + HiC reads
The workflow requires the following:
- Species Taxonomy ID number
- NCBI Genome assembly accession code
- BUSCO Lineage
- WGS accurate reads accession code
- NCBI HiC reads accession code
The workflow will get the data and process it to generate genome profiling (genomescope, smudgeplot -optional-), assembly stats (gfastats), merqury stats (QV, completeness), BUSCO, snailplot, contamination blobplot, and HiC ...
