Workflows
What is a Workflow?Filters
Query
Created At
Updated At
Tool
purge_dups1
BUSCO6
gfastats5
Merqury5
Bwa-mem23
BEDTools2
Diamond2
fastp2
GenomeScope 2.02
HiCExplorer2
Minimap22
NCBI Datasets2
Picard2
RSeQC2
Smudgeplots2
SRA Software Toolkit2
AGAT1
Bandage1
Cutadapt1
OMArk1
More...
Workflow type
Galaxy1
Submitter
Diego De Panis1
Team
ERGA Assembly1
Space
ERGA1
Creator
Diego De Panis1
Topic annotations
Whole genome sequencing1
Operation annotations
Genome assembly1
Maturity
Stable1
Stable
The workflow takes a trimmed HiFi reads collection, Pri/Alt contigs, and the values for transition parameter and max coverage depth (calculated from WF1) to run Purge_Dups. It produces purged Pri and Alt contigs assemblies, and runs all the QC analysis (gfastats, BUSCO, and Merqury).
