Workflows
What is a Workflow?Filters
Query
Created At
Updated At
Tool
scikit-image1
CellProfiler2
Konstanz Information Miner (KNIME)2
Galaxy1
Galaxy Image Analysis1
ImageJ21
Workflow type
Galaxy1
Submitter
Riccardo Massei1
Space
Independent Teams1
Creator
Riccardo Massei1
Maturity
Stable1
1
Workflow matching the given criteria:
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Tool:
scikit-image1
Topic annotations:
Imaging1
Stable
Workflow to perform nuclei cell counting on High Content Screening (HCS) Data and upload result into OMERO
In this workflow, cell images are first uploaded to both Galaxy and OMERO using the “OMERO Image Import” tool. Concurrently, image processing is performed. After thresholding and binarization, key features of nuclei, such as area, label number, and perimeter, are computed from the processed images and saved as a CSV file. The result file is then attached to each image stored in OMERO using ...
