qiime2-I-import/QIIME2-Ia import multiplexed data single end
Version 1

View on GitHub Download RO Crate Run on usegalaxy.eu
Workflow Type: Galaxy

Importing single-end multiplexed data (not demultiplexed yet)

SEEK ID: https://workflowhub.eu/workflows/872?version=1

Inputs

ID Name Description Type
Barcodes #main/Barcodes Barcode sequences
  • File
Metadata #main/Metadata Metadata
  • File
Metadata parameter #main/Metadata parameter Column name of the metadata to be used for demultiplexing
  • string
Reverse complement barcodes #main/Reverse complement barcodes Reverse complement barcodes
  • boolean
Sequences #main/Sequences Single-end sequences
  • File

Steps

ID Name Description
5 Input files qiime2 tools input This step allows the input of the files to be analysed and then generate a qza output, necessary for the QIIME2 pipeline. toolshed.g2.bx.psu.edu/repos/q2d2/qiime2_core__tools__import/qiime2_core__tools__import/2023.5.0+dist.h193f7cc9.3
6 Metadata as artifact Import the metadata as artifact toolshed.g2.bx.psu.edu/repos/q2d2/qiime2_core__tools__import/qiime2_core__tools__import/2023.5.0+dist.h193f7cc9.3
7 Demultiplex single-end data qiime2 demux emp-single Demultiplex sequence data generated with the EMP protocol. toolshed.g2.bx.psu.edu/repos/q2d2/qiime2__demux__emp_single/qiime2__demux__emp_single/2023.5.0+q2galaxy.2023.5.0.2
8 Summarize demultiplexed output qiime2 demux summarize Summarize counts per sample. (Galaxy Version 2023.5.0+q2galaxy.2023.5.0.2) toolshed.g2.bx.psu.edu/repos/q2d2/qiime2__demux__summarize/qiime2__demux__summarize/2023.5.0+q2galaxy.2023.5.0.2

Outputs

ID Name Description Type
Demultiplexed single-end data #main/Demultiplexed single-end data n/a
  • File
Summary of the demultiplexing #main/Summary of the demultiplexing n/a
  • File

Version History

v0.1 (earliest) Created 3rd May 2024 at 03:01 by WorkflowHub Bot

Updated to v0.1


Frozen v0.1 9dc83f3
help Creators and Submitter
Creator
  • Debjyoti Ghosh
Additional credit

Helmholtz-Zentrum für Umweltforschung - UFZ

Submitter
License
MIT License
Activity

Views: 118

Created: 3rd May 2024 at 03:01

help Tags

This item has not yet been tagged.

help Attributions

None

Total size: 81.5 KB
Powered by
 (v.1.14.1)
About WorkflowHub | Acknowledgements | Credits | Terms & Conditions | Privacy Policy | Cite us | Contact us
Copyright © 2008 - 2023 The University of Manchester and HITS gGmbH