Workflow Types
Core Workflow Types
| Title | Identifier | URL | # Workflows | Contributor | |
|---|---|---|---|---|---|
| Snakemake | https://doi.org/10.1093/bioinformatics/bts480 | https://snakemake.readthedocs.io | 14 | ||
| Nextflow | https://www.nextflow.io/ | https://www.nextflow.io/ | 23 | ||
| KNIME | https://www.knime.com/ | https://www.knime.com/ | 5 | ||
| Galaxy | https://galaxyproject.org/ | https://galaxyproject.org/ | 115 | ||
| Common Workflow Language (CWL) | https://w3id.org/cwl/v1.0/ | https://www.commonwl.org/ | 54 |
User-added Workflow Types
| Title | Identifier | URL | # Workflows | Contributor | |
|---|---|---|---|---|---|
| Jupyter | https://jupyter.org/ | https://jupyter.org/ | 17 | Douglas Lowe | |
| Shell Script | Not specified | Not specified | 11 | Finn Bacall | |
| PyCOMPSs | https://pypi.org/project/pycompss/ | https://www.bsc.es/research-and-development/software-and-apps/software-list/comp-superscalar | 4 | Stian Soiland-Reyes | |
| Scipion | Not specified | http://scipion.i2pc.es/ | 1 | Stuart Owen | |
| Janis | Not specified | https://janis.readthedocs.io/ | 1 | Richard Lupat | |
| Bpipe | Not specified | https://doc.bpipe.org | 5 | Sergi Sayols | |
| Python | https://www.python.org/ | https://www.python.org/ | 15 | Genís Bayarri |
