Workflow Types
Core Workflow Types
| Title | Identifier | URL | # Workflows | Contributor | |
|---|---|---|---|---|---|
Snakemake |
https://doi.org/10.1093/bioinformatics/bts480 | https://snakemake.readthedocs.io | 16 | ||
Nextflow |
https://www.nextflow.io/ | https://www.nextflow.io/ | 29 | ||
KNIME |
https://www.knime.com/ | https://www.knime.com/ | 5 | ||
Galaxy |
https://galaxyproject.org/ | https://galaxyproject.org/ | 130 | ||
Common Workflow Language (CWL)
|
https://w3id.org/cwl/v1.0/ | https://www.commonwl.org/ | 54 |
User-added Workflow Types
| Title | Identifier | URL | # Workflows | Contributor | |
|---|---|---|---|---|---|
Jupyter |
https://jupyter.org/ | https://jupyter.org/ | 19 | Douglas Lowe | |
|
Shell Script |
Not specified | Not specified | 11 | Finn Bacall | |
PyCOMPSs |
https://pypi.org/project/pycompss/ | https://www.bsc.es/research-and-development/software-and-apps/software-list/comp-superscalar | 4 | Stian Soiland-Reyes | |
|
Scipion |
Not specified | http://scipion.i2pc.es/ | 3 | Stuart Owen | |
|
Janis |
Not specified | https://janis.readthedocs.io/ | 1 | Richard Lupat | |
|
Bpipe |
Not specified | https://doc.bpipe.org | 5 | Sergi Sayols | |
|
Python |
https://www.python.org/ | https://www.python.org/ | 16 | Genís Bayarri | |
|
Workflow Description Language (WDL)
|
https://doi.org/10.7490/f1000research.1114631.1 | https://openwdl.org/ | 5 | Finn Bacall | |
|
R Markdown document (RMD)
|
Not specified | Not specified | 0 | Adam Tofilski | |
|
R markdown (RMD)
|
Not specified | Not specified | 1 | Adam Tofilski | |
BioCompute Object (BCO)
|
https://doi.org/10.1109/IEEESTD.2020.9094416 | https://biocomputeobject.org/ | 0 | Stian Soiland-Reyes |
