Rbbt (Ruby bioinformatics toolkit)
|
Not specified
|
https://github.com/mikisvaz/rbbt-util |
1 |
Miguel Vazquez |
|
|
pisad (a Phsaed Intraspecies Sample Anomalies Detection tool, suitable for multiple species without ref- erence information.)
|
Not specified
|
https://github.com/ZhantianXu/PISAD |
0 |
zhantian xu |
|
|
Argo Workflow (Argo)
|
https://argoproj.github.io/workflows/ |
https://argoproj.github.io/workflows/ |
2 |
Daniel Bauer |
|
Playbook Workflow Builder Workflow |
Not specified
|
https://playbook-workflow-builder.cloud |
9 |
Daniel Clarke |
|
|
Plug-in (Add-on)
|
Not specified
|
Not specified
|
1 |
Kieran Atkins |
|
|
GIMP Image Annotator (GIÀ)
|
https://github.com/kieranatkins/gimp-image-annotator |
Not specified
|
0 |
Kieran Atkins |
|
|
PiFlow |
Not specified
|
https://github.com/cas-bigdatalab/piflow |
1 |
Yaxuan Zhang |
|
|
DVC |
Not specified
|
Not specified
|
1 |
Fabian Hausmann |
|
Docker (Docker)
|
https://www.docker.com/ |
https://www.docker.com/ |
17 |
Genís Bayarri |
|
|
Combine multi-wavelength workflows |
Not specified
|
Not specified
|
0 |
Volodymyr Savchenko |
|
|
|
Not specified
|
Not specified
|
0 |
Rutger Vos |
|
|
ONTViSc (ONT-based Viral Screening for Biosecurity)
|
Not specified
|
https://github.com/eresearchqut/ontvisc |
0 |
Magdalena Antczak |
|
|
Perl |
Not specified
|
https://www.perl.org/ |
1 |
Anand Maurya |
|
|
ARA (Automated Record Analysis)
|
Not specified
|
https://github.com/maurya-anand/ARA |
0 |
Anand Maurya |
|
|
Integrating several EU-RI datasets with focus on preclinical and discovery research bioimaging |
Not specified
|
Not specified
|
0 |
Elisabetta Spinazzola |
|
Quarto Markdown (qmd)
|
Not specified
|
https://quarto.org/docs/authoring/markdown-basics.html |
1 |
Stian Soiland-Reyes |
|
|
Jupyter |
https://jupyter.org/ |
https://jupyter.org/ |
38 |
Douglas Lowe |
|
|
Uniform Interface to Computing Resources (UNICORE)
|
Not specified
|
https://www.unicore.eu/ |
3 |
Thomas Gruber |
|
|
Pi |
Not specified
|
Not specified
|
1 |
Tina Tian |
|
MGnify Taxonomic profiling pipeline (motus_pipeline)
|
Not specified
|
Not specified
|
0 |
Ekaterina Sakharova |
|
Autosubmit (AS)
|
https://autosubmit.readthedocs.io/ |
https://autosubmit.readthedocs.io/ |
2 |
Bruno P. Kinoshita |
|
BioCompute Object (BCO)
|
https://doi.org/10.1109/IEEESTD.2020.9094416 |
https://biocomputeobject.org/ |
1 |
Stian Soiland-Reyes |
|
|
R markdown (RMD)
|
Not specified
|
Not specified
|
7 |
Adam Tofilski |
|
|
R Markdown document (RMD)
|
Not specified
|
Not specified
|
0 |
Adam Tofilski |
|
|
Workflow Description Language (WDL)
|
https://doi.org/10.7490/f1000research.1114631.1 |
https://openwdl.org/ |
8 |
Finn Bacall |
|
Python |
https://www.python.org/ |
https://www.python.org/ |
50 |
Genís Bayarri |
|
|
Bpipe |
Not specified
|
https://doc.bpipe.org |
5 |
Sergi Sayols |
|
|
Janis |
Not specified
|
https://janis.readthedocs.io/ |
1 |
Richard Lupat |
|
|
Scipion |
Not specified
|
http://scipion.i2pc.es/ |
7 |
Stuart Owen |
|
COMPSs |
http://compss.bsc.es/ |
http://compss.bsc.es/ |
103 |
Stian Soiland-Reyes |
|
|
Shell Script |
Not specified
|
Not specified
|
14 |
Finn Bacall |
|
Snakemake 
Nextflow 
KNIME 
Galaxy 
Common Workflow Language (CWL)
