Workflow Types

Core Workflow Types

Title Identifier URL # Workflows Contributor
Snakemake https://doi.org/10.1093/bioinformatics/bts480 https://snakemake.readthedocs.io 16
Nextflow https://www.nextflow.io/ https://www.nextflow.io/ 29
KNIME https://www.knime.com/ https://www.knime.com/ 5
Galaxy https://galaxyproject.org/ https://galaxyproject.org/ 130
Common Workflow Language (CWL) https://w3id.org/cwl/v1.0/ https://www.commonwl.org/ 54

User-added Workflow Types

Title Identifier URL # Workflows Contributor
Jupyter https://jupyter.org/ https://jupyter.org/ 19 Douglas Lowe
Shell Script Not specified Not specified 11 Finn Bacall
PyCOMPSs PyCOMPSs https://pypi.org/project/pycompss/ https://www.bsc.es/research-and-development/software-and-apps/software-list/comp-superscalar 4 Stian Soiland-Reyes
Scipion Not specified http://scipion.i2pc.es/ 3 Stuart Owen
Janis Not specified https://janis.readthedocs.io/ 1 Richard Lupat
Bpipe Not specified https://doc.bpipe.org 5 Sergi Sayols
Python https://www.python.org/ https://www.python.org/ 16 GenĂ­s Bayarri
Workflow Description Language (WDL) https://doi.org/10.7490/f1000research.1114631.1 https://openwdl.org/ 5 Finn Bacall
R Markdown document (RMD) Not specified Not specified 0 Adam Tofilski
R markdown (RMD) Not specified Not specified 1 Adam Tofilski
BioCompute Object BioCompute Object (BCO) https://doi.org/10.1109/IEEESTD.2020.9094416 https://biocomputeobject.org/ 0 Stian Soiland-Reyes

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