2 items tagged with 'name:HIC'.
Stable
The workflow takes trimmed HiC forward and reverse reads, and Hap1/Hap2 assemblies to produce Hap1 and Hap2 scaffolded assemblies using YaHS. It also runs all the QC analyses (gfastats, BUSCO, Merqury and Pretext).
Created: 11th Oct 2023 at 16:06, Last updated: 31st Oct 2023 at 12:45
Views: 300, Downloads: 36
Stable
The workflow takes a trimmed HiFi reads collection, Forward/Reverse HiC reads, and the max coverage depth (calculated from WF1) to run Hifiasm in HiC phasing mode. It produces both Pri/Alt and Hap1/Hap2 assemblies, and runs all the QC analysis (gfastats, BUSCO, and Merqury). The default Hifiasm purge level is Light (l1).
Created: 9th Oct 2023 at 13:47
Views: 287, Downloads: 30