1 item tagged with 'variant'.
SINGLE-END workflow. Align reads on fasta reference/assembly using bwa mem, get a consensus, variants, mutation explanations.
- For "bcftools call" consensus step, the --ploidy file is in "Données partagées" (Shared Data) and must be imported in your history to use the worflow by providing this file (tells bcftools to consider haploid variant calling).
- SELECT the mot ADAPTED VADR MODEL for annotation (see vadr parameters).
Submitter: Fabrice Touzain
Created: 27th Jun 2023 at 15:41, Last updated: 27th Jun 2023 at 15:57
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