1 item tagged with 'bioformats2raw'.
A command line tool for converting image data into either of the standard file formats OME-TIFF or OME-Zarr.
The tool wraps the dedicated file converters bfconvert and bioformats2raw to convert into OME-TIFF or OME-Zarr, respectively. The workflow management system NextFlow is used to perform conversion in parallel for batches of images.
The tool also wraps s3 and Aspera clients (go-mc and aspera-cli, respectively). Therefore, input and output locations can be specified as local ...
Creator: Bugra Oezdemir
Submitter: bugra oezdemir
Created: 10th Apr 2023 at 11:40, Last updated: 27th Apr 2023 at 12:21
Views: 318, Downloads: 0