1 item tagged with 'ATACseq'.
This workflow take as input a collection of paired fastq. It will remove bad quality and adapters with cutadapt. Map with Bowtie2 end-to-end. Will remove reads on MT and unconcordant pairs and pairs with mapping quality below 30 and PCR duplicates. Will compute the pile-up on 5' +- 100bp. Will call peaks and count the number of reads falling in the 1kb region centered on the summit. Will plot the number of reads for each fragment length.
Creators: Lucille Delisle, Lucille Delisle
Submitter: WorkflowHub Bot
Created: 21st Oct 2022 at 03:01, Last updated: 17th Jan 2023 at 03:01
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