circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data
nf-core/circrna is a best-practice analysis pipeline for the quantification, miRNA target prediction and differential expression analysis of circular RNAs in paired-end RNA sequencing data.
The pipeline is built using Nextflow, a workflow tool to run tasks across multiple compute infrastructures in a very portable manner. It comes ...
Creator: Barry Digby
Submitter: Barry Digby
RNASeq-DE @ NCI-Gadi processes RNA sequencing data (single, paired and/or multiplexed) for differential expression (raw FASTQ to counts). This pipeline consists of multiple stages and is designed for the National Computational Infrastructure's (NCI) Gadi supercompter, leveraging multiple nodes to run each stage in parallel.
Infrastructure_deployment_metadata: Gadi (NCI)
Type: Shell Script
Creators: Tracy Chew, Rosemarie Sadsad, Cali Willet
Submitter: Tracy Chew