WorkflowsWhat is a Workflow?
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atavide is a complete workflow for metagenomics data analysis, including QC/QA, optional host removal, assembly and cross-assembly, and individual read based annotations. We have also built in some advanced analytics including tools to assign annotations from reads to contigs, and to generate metagenome-assembled genomes in several different ways, giving you the power to explore your data!
atavide is 100% snakemake and conda, so you only need to install the snakemake workflow, and then
Submitter: Rob Edwards