Workflows
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Created At
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Workflow type
Shell Script1
Tag
bash1
BBduk1
counts1
DE1
differential expression1
differential_expression1
expression1
FASTQ1
FastQC1
Gadi1
HTSeq1
illumina1
MultiQC1
NCI1
NCI-Gadi1
parallel1
PBS1
rna1
rna-seq1
RNASEQ1
RSeQC1
SAMTools1
scalable1
STAR1
workflow1
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Submitter
Tracy Chew1
Space
Australian BioCommons1
Topic annotations
Gene expression1
Whole genome sequencing7
Genetic variation6
Bioinformatics5
Genomics5
Transcriptomics3
DNA mutation2
Gene transcripts2
Population genomics2
Sequence assembly2
Biomedical science1
DNA packaging1
DNA polymorphism1
Mapping1
Metagenomic sequencing1
Metagenomics1
Structural genomics1
Structural variation1
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Operation annotations
Gene expression1
Maturity
Stable1
Stable
RNASeq-DE @ NCI-Gadi processes RNA sequencing data (single, paired and/or multiplexed) for differential expression (raw FASTQ to counts). This pipeline consists of multiple stages and is designed for the National Computational Infrastructure's (NCI) Gadi supercompter, leveraging multiple nodes to run each stage in parallel.
Infrastructure_deployment_metadata: Gadi (NCI)
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