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Workflow type
Shell Script1
Tag
bash1
BBduk1
counts1
DE1
differential expression1
differential_expression1
expression1
FASTQ1
FastQC1
Gadi1
HTSeq1
illumina1
MultiQC1
NCI1
NCI-Gadi1
parallel1
PBS1
rna1
rna-seq1
RNASEQ1
RSeQC1
SAMTools1
scalable1
STAR1
workflow1
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Submitter
Tracy Chew1
Space
Australian BioCommons1
Topic annotations
Expression analysis1
Operation annotations
Expression analysis1
De-novo assembly3
Variant calling3
Indel detection2
Sequence assembly2
SNP detection2
Transcriptome assembly2
Variant filtering2
Differential gene expression profiling1
Gene expression profiling1
Genetic mapping1
Genome analysis1
Genome comparison1
Mapping1
Phasing1
Sequence alignment1
Validation1
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Maturity
Stable1
1
Workflow matching the given criteria:
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Operation annotations:
Expression analysis1
Stable
RNASeq-DE @ NCI-Gadi processes RNA sequencing data (single, paired and/or multiplexed) for differential expression (raw FASTQ to counts). This pipeline consists of multiple stages and is designed for the National Computational Infrastructure's (NCI) Gadi supercompter, leveraging multiple nodes to run each stage in parallel.
Infrastructure_deployment_metadata: Gadi (NCI)
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