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Snakemake1
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Bram Danneels1
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EBP-Nor Genome Assembly pipeline
This repository contains the EBP-Nor genome assembly pipeline. This pipeline is implemented in snakemake. This pipeline is developed to create haplotype-resolved genome assemblies from PacBio HiFi reads and HiC reads, and is primarly designed for diploid eukaryotic organisms. The pipeline is designed to work on a linux cluster with slurm as workload manager.
Requirements & Setup
Some software need to be configured/installed before the pipeline can be run ...
