Workflows
What is a Workflow?Filters
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Created At
Updated At
Workflow type
Snakemake1
Submitter
Sebastian Röner1
Team
KircherLab1
Space
Independent Teams1
Creator
Sebastian Röner1
Topic annotations
Standardisation and normalisation1
Operation annotations
Standardisation and normalisation1
Feature extraction1
Nucleic acid property calculation1
Read mapping1
Sequence alignment analysis (site correlation)1
Sequencing quality control1
Maturity
Stable1
1
Workflow matching the given criteria:
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Operation annotations:
Standardisation and normalisation1
Stable
cfDNA UniFlow is a unified, standardized, and ready-to-use workflow for processing whole genome sequencing (WGS) cfDNA samples from liquid biopsies. It includes essential steps for pre-processing raw cfDNA samples, quality control and reporting. Additionally, several optional utility functions like GC bias correction and estimation of copy number state are included. Finally, we provide specialized methods for extracting coverage derived signals and visualizations comparing cases and controls. ...
