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Galaxy4
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Dennis Dollée4
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Seq4AMR4
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Independent Teams4
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Work-in-progress2
4
Workflows visible to you, out of a total of 4
Work-in-progress
With this galaxy pipeline you can use Salmonella sp. next generation sequencing results to predict bacterial AMR phenotypes and compare the results against gold standard Salmonella sp. phenotypes obtained from food.
This pipeline is based on the work of the National Food Agency of Canada. Doi: 10.3389/fmicb.2020.00549
Work-in-progress
Correlation between Phenotypic and In Silico Detection of Antimicrobial Resistance in Salmonella enterica in Canada Using Staramr.
