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Workflow type
R markdown1
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Francesco Messina1
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BY-COVID (general)1
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ELIXIR1
Creator
Francesco Messina1
Operation annotations
Differential protein expression profiling1
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Workflow visible to you, out of a total of 1
A R workflow for proteomics data analysis is reported. This pipeline was basing on protein expression projects, stored on the PRIDE database and reported on the COVID-19 Data portal. This is an R pipeline to analyze protein expression data, built on lung cell lines infected by SARS-CoV-2 variants: B.1, Delta, and Omicron BA.1 (Mezler et al. 2023) https://www.ebi.ac.uk/pride/archive/projects/PXD037265. This pipeline can obtain DEPs for each variant, starting from normalized protein expression ...
