Workflows
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Created At
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Workflow type
Python1
Tag
Bioinformatics1
gene expression correlation1
gene expression data wrangling1
geo database mining1
Submitter
Yasmmin Martins1
Space
Independent Teams1
Topic annotations
Gene expression1
Bioinformatics7
Protein interactions3
Data mining2
Protein interaction experiment2
Workflows2
Biological databases1
Data integration and warehousing1
Data submission, annotation and curation1
Drug discovery1
Medical informatics1
Molecular interactions, pathways and networks1
Ontology and terminology1
More...
Operation annotations
Gene expression1
Maturity
Stable1
Stable
Summary
The PPI information aggregation pipeline starts getting all the datasets in GEO database whose material was generated using expression profiling by high throughput sequencing. From each database identifiers, it extracts the supplementary files that had the counts table. Once finishing the download step, it identifies those that were normalized or had the raw counts to normalize. It also identify and map the gene ids to uniprot (the ids found usually ...
