Workflows

Galaxy Workflow created on Galaxy-E european instance, ecology.usegalaxy.eu, related to the Galaxy training tutorial "OBIS marine indicators" .

This workflow allows to compute and visualize marine biodiversity indicators from OBIS data.

Galaxy Workflow created on Galaxy-E european instance, ecology.usegalaxy.eu, related to the Galaxy training tutorial "Champs blocs" .

This workflow allows to produce Visual Rollover Indicator and dissimilarity as diversity indices on boulder fields.

Galaxy Workflow created on Galaxy-E european instance, ecology.usegalaxy.eu, to analyze crowdsourcing results of the SPIPOLL hoverflies GAPARS European project activity on MMOS server.

Galaxy Workflow created on Galaxy-E european instance, ecology.usegalaxy.eu, related to the Galaxy training tutorial "Deep learning to predict animal behavior" .

This workflow allows to analyze animal behavior data through deep learning.

Galaxy Workflow created on Galaxy-E european instance, ecology.usegalaxy.eu, related to the Galaxy training tutorial "Antarctic sea ecoregionalization" .

This workflow allows to analyze marine benthic biodiversity data to compute ecoregions regarding environmental data.

Galaxy Workflow created on Galaxy-E european instance, ecology.usegalaxy.eu, related to the Galaxy training tutorial "Sentinel 2 biodiversity" .

This workflow allows to analyze remote sensing sentinel 2 satellites data to compute spectral indices such as the NDVI and visualizing biodiversity indicators

Galaxy Workflow created on Galaxy-E european instance, ecology.usegalaxy.eu, related to the Galaxy training tutorial "Biodiversity data exploration"

This workflow allows to explore biodiversity data looking at homoscedasticity, normality or collinearity of presences-absence or abundance data and at comparing beta diversity taking into account space, time and species components ...

Galaxy Workflow created on Galaxy-E european instance, ecology.usegalaxy.eu, related to the Galaxy training tutorial "Metabarcoding/eDNA through Obitools" .

This workflow allows to analyze DNA metabarcoding / eDNA data produced on Illumina sequencers using the OBITools.

This Galaxy-E workflow was made from the "Cleaning GBIF data for the use in biogeography" tutorial and allows to:

• Use CoordinateCleaner to automatically flag problematic records
• Use GBIF provided meta-data to improve coordinate quality, tailored to your downstream analyses
• Use automated cleaning algorithms of CoordinateCleaner to identify problematic contributing datasets
• Visualize data ...

Workflow to take DataOne data packages (raw datasets + metadata written in Ecological Metadata Standard) as input and create a DwC occurence.csv file almost ready to put in a Dawrin core Archive using eml-annotations at the attribute level