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Nextflow2
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Nextflow2
nf-core2
workflow2
identification1
mass-spectrometry1
Metabolomics1
quantification1
rna1
rna-seq1
RNASEQ1
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Submitter
Phil Ewels2
Team
nf-core2
Space
nf-core2
2
Workflows visible to you, out of a total of 2
Work-in-progress
metaboigniter is bioinformatics pipeline for pre-processing of mass spectrometry-based metabolomics data. It can be used to perform quantification and identification based on MS1 and MS2 data. The backbone of pipeline is based on XCMS, OpenMS, CAMERA, MSnbase, MetFrag, CSIFingerID, CFM-ID, and several other customized tools to noise filtering, quantification and identification both for library and in-silico identification. Please go on to this page to learn how to use the workflow
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RNA sequencing analysis pipeline using STAR, HISAT2 and Salmon with gene counts and quality control.
