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Analysis of variation within individual COVID-19 samples using bowtie2, bwa, fastp, multiqc , picard ,samtools, snpEff Workflow, tools and data are available on This worklow was ported into CWL from a Galaxy Workflow ( migrated to CWL).

Type: Common Workflow Language

Creator: Camille Juigné

Submitter: Camille Juigné

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