Workflows

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Summary

This notebook shows how to integrate genomic and image data resources. This notebook looks at the question Which diabetes related genes are expressed in the pancreas?

Steps:

  • Query humanmine.org, an integrated database of Homo sapiens genomic data using the intermine API to find the genes.
  • Using the list of found genes, search in the Image Data Resource (IDR) for images linked to the genes, tissue and disease.

We use the intermine API and the IDR API

The notebook can be launched ...

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