name: "prokkagff2tsv"
description: Converts Prokka GFF output to a tabular TSV format
keywords:
  - prokka
  - gff
  - conversion
input:
  - meta:
      type: map
      description: Groovy Map containing sample information
  - gff:
      type: file
      description: Prokka GFF annotation file
      pattern: "*.gff{.gz,}"
output:
  - meta:
      type: map
      description: Groovy Map containing sample information
  - tsv:
      type: file
      description: Converted TSV file containing Prokka annotations
      pattern: "*.prokka-annotations.tsv.gz"
  - versions:
      type: file
      description: File containing software versions
      pattern: "versions.yml"
authors:
  - "@danilodileo"
