name: bbmap_index
description: Creates an index from a fasta file, ready to be used by bbmap.sh in mapping
  mode.
keywords:
  - map
  - index
  - fasta
tools:
  - bbmap:
      description: BBMap is a short read aligner, as well as various other bioinformatic
        tools.
      homepage: https://jgi.doe.gov/data-and-tools/software-tools/bbtools/bb-tools-user-guide/
      documentation: https://jgi.doe.gov/data-and-tools/software-tools/bbtools/bb-tools-user-guide/
      licence: ["UC-LBL license (see package)"]
      identifier: biotools:bbmap
input:
  - fasta:
      type: file
      description: fasta formatted file with nucleotide sequences
      pattern: "*.{fna,fa,fasta}"
      ontologies: []
output:
  index:
    - ref:
        type: directory
        description: Directory containing the index files
  versions:
    - versions.yml:
        type: file
        description: File containing software versions
        pattern: "versions.yml"
        ontologies:
          - edam: http://edamontology.org/format_3750 # YAML
authors:
  - "@erikrikarddaniel"
maintainers:
  - "@erikrikarddaniel"
