/*
 * -------------------------------------------------
 *  Nextflow config file for running full-size tests
 * -------------------------------------------------
 * Defines bundled input files and everything required
 * to run a full size pipeline test. Use as follows:
 *   nextflow run nf-core/mag -profile test_full,<docker/singularity>
 */

params {
  config_profile_name = 'Full test profile'
  config_profile_description = 'Full test dataset to check pipeline function'

  // Input data for full size test
  // hg19 reference with highly conserved and low-complexity regions masked by Brian Bushnell
  host_fasta = "s3://nf-core-awsmegatests/mag/input_data/hg19_main_mask_ribo_animal_allplant_allfungus.fa.gz"
  input = "s3://nf-core-awsmegatests/mag/input_data/samplesheets/samplesheet.full.csv"

  centrifuge_db = "s3://nf-core-awsmegatests/mag/input_data/p_compressed+h+v.tar.gz"
  kraken2_db = "s3://nf-core-awsmegatests/mag/input_data/minikraken_8GB_202003.tgz"
  cat_db = "s3://nf-core-awsmegatests/mag/input_data/CAT_prepare_20210107.tar.gz"
  gtdb = "s3://nf-core-awsmegatests/mag/input_data/gtdbtk_r202_data.tar.gz"

  // reproducibility options for MEGAHIT, SPAdes and BUSCO not turned on
}
