# nf-core/eager: Documentation

The nf-core/eager documentation is split into the following pages:

* [Usage](usage.md)
  * An overview of how the pipeline works, how to run it and a description of all of the different command-line flags.
  * Also includes: FAQ, Troubleshooting and Tutorials
* [Output](output.md)
  * An overview of the different results produced by the pipeline and how to interpret them.

You can find a lot more documentation about installing, configuring and running nf-core pipelines on the website: [https://nf-co.re](https://nf-co.re).

Additional pages are:

* [Installation](https://nf-co.re/usage/installation)
* Pipeline configuration
  * [Local installation](https://nf-co.re/usage/local_installation)
  * [Adding your own system config](https://nf-co.re/usage/adding_own_config)
  * [Reference genomes](https://nf-co.re/usage/reference_genomes)
* [Contribution Guidelines](../.github/CONTRIBUTING.md)
  * Basic contribution & behaviour guidelines
  * Checklists and guidelines for people who would like to contribute code
  