# nf-core/differentialabundance: Changelog

The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).

## v1.0.1 - 2022-01-25

- [[#49](https://github.com/nf-core/differentialabundance/pull/49) - Add citation fixes, missing logos, output detail, and trigger Zenodo ([@pinin4fjords](https://github.com/pinin4fjords), review by [@apeltzer](https://github.com/apeltzer), [@jfy133](https://github.com/jfy133))

## v1.0.0 - 2022-01-23

Initial release of nf-core/differentialabundance, created with the [nf-core](https://nf-co.re/) template.

### `Added`

- [[#1](https://github.com/nf-core/differentialabundance/issues/3)] - Set up initial modules, define and validate workflow inputs ([@pinin4fjords](https://github.com/pinin4fjords), review by [@WackerO](https://github.com/WackerO))
- [[#4](https://github.com/nf-core/differentialabundance/issues/4)] - Add input checking ([@pinin4fjords](https://github.com/pinin4fjords), review by [@WackerO](https://github.com/WackerO))
- [[#5](https://github.com/nf-core/differentialabundance/issues/5)] - Add differential analysis ([@pinin4fjords](https://github.com/pinin4fjords), review by [@WackerO](https://github.com/WackerO))
- [[#6](https://github.com/nf-core/differentialabundance/issues/6)] - Add exploratory plotting ([@pinin4fjords](https://github.com/pinin4fjords), review by [@WackerO](https://github.com/WackerO))
- [[#7](https://github.com/nf-core/differentialabundance/issues/7)] - Add differential plotting ([@pinin4fjords](https://github.com/pinin4fjords), review by [@WackerO](https://github.com/WackerO))
- [[#8](https://github.com/nf-core/differentialabundance/issues/8)] - Establish outputs/ reports ([@pinin4fjords](https://github.com/pinin4fjords), review by [@WackerO](https://github.com/WackerO))
- [[#12](https://github.com/nf-core/differentialabundance/issues/12)] - Handle spike sequences correctly ([@pinin4fjords](https://github.com/pinin4fjords), review by [@WackerO](https://github.com/WackerO))
- [[#15](https://github.com/nf-core/differentialabundance/issues/15)] - Add filtering module ([@pinin4fjords](https://github.com/pinin4fjords), review by [@WackerO](https://github.com/WackerO))
- [[#21](https://github.com/nf-core/differentialabundance/issues/21)] - Gene set analysis ([@pinin4fjords](https://github.com/pinin4fjords), review by [@WackerO](https://github.com/WackerO))
- [[#22](https://github.com/nf-core/differentialabundance/issues/22)] - Complete docs- README etc ([@pinin4fjords](https://github.com/pinin4fjords), review by [@WackerO](https://github.com/WackerO))
- [[#23](https://github.com/nf-core/differentialabundance/issues/23)] - Complete minimal report content ([@pinin4fjords](https://github.com/pinin4fjords), review by [@WackerO](https://github.com/WackerO))
- [[#38](https://github.com/nf-core/differentialabundance/issues/38)] - Complete full-size test data setup ([@pinin4fjords](https://github.com/pinin4fjords), review by [@WackerO](https://github.com/WackerO))
- [[#41](https://github.com/nf-core/differentialabundance/issues/41)] - update citations ([@pinin4fjords](https://github.com/pinin4fjords), review by [@WackerO](https://github.com/WackerO))

### `Fixed`

### `Dependencies`

### `Deprecated`
