/*
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    Nextflow config file for running minimal tests with control samples
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    Defines input files and everything required to run a fast and simple pipeline test.

    Use as follows:
        nextflow run nf-core/atacseq -profile test_controls,<docker/singularity> --outdir <OUTDIR>

----------------------------------------------------------------------------------------
*/

params {
    config_profile_name        = 'Test profile with controls'
    config_profile_description = 'Minimal test dataset to check pipeline function'

    // Limit resources so that this can run on GitHub Actions
    max_cpus   = 2
    max_memory = '6.GB'
    max_time   = '6.h'

    // Input data
    input       = 'https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/samplesheet/v2.1/samplesheet_test_controls.csv'
    read_length = 50

    // Genome references
    mito_name = 'MT'
    fasta     = 'https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/reference/genome.fa'
    gtf       = 'https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/reference/genes.gtf'

    // For speed to avoid CI time-out
    fingerprint_bins = 100
}
