/*
========================================================================================
    Nextflow config file for running minimal tests
========================================================================================
    Defines input files and everything required to run a fast and simple pipeline test.

    Use as follows:
        nextflow run nf-core/ampliseq -profile test_doubleprimers,<docker/singularity> --outdir <OUTDIR>

----------------------------------------------------------------------------------------
*/

params {
    config_profile_name = 'Test doubleprimers profile'
    config_profile_description = 'Minimal test dataset to check pipeline function when removing double primers'

    // Limit resources so that this can run on GitHub Actions
    max_cpus   = 2
    max_memory = '6.GB'
    max_time   = '6.h'

    // Input data
    FW_primer = "NNNNCCTAHGGGRBGCAGCAG"
    RV_primer = "GACTACHVGGGTATCTAATCC"
    double_primer = true
    filter_ssu = "mito"
    dada_ref_taxonomy = false
    input = "https://raw.githubusercontent.com/nf-core/test-datasets/ampliseq/samplesheets/Samplesheet_double_primer.tsv"
    trunc_qmin = 30
    skip_fastqc = true
}
