/*
 * -------------------------------------------------
 *  Nextflow config file for running tests
 * -------------------------------------------------
 * Defines bundled input files and everything required
 * to run a fast and simple test. Use as follows:
 *   nextflow run nf-core/airrflow -profile test_tcr,<docker/singularity>
 */

params {
    config_profile_name = 'Test profile'
    config_profile_description = 'Minimal test dataset to check pipeline function'
    // Limit resources so that this can run on GitHub Actions
    max_cpus = 2
    max_memory = 6.GB
    max_time = 48.h
    index_file = false
    umi_length = 12
    umi_position = 'R2'
    cprimer_start = 5
    skip_report = false
    set_cluster_threshold = true
    cluster_threshold = 0
    library_generation_method = 'dt_5p_race_umi'
    cprimer_position = 'R1'


    // Input data
    input = 'https://raw.githubusercontent.com/nf-core/test-datasets/airrflow/testdata-tcr/TCR_metadata.tsv'
    cprimers = 'https://raw.githubusercontent.com/nf-core/test-datasets/airrflow/testdata-tcr/cprimers.fasta'
    race_linker = 'https://raw.githubusercontent.com/nf-core/test-datasets/airrflow/testdata-tcr/linker.fasta'
    imgtdb_base = 'https://raw.githubusercontent.com/nf-core/test-datasets/airrflow/database-cache/imgtdb_base.zip'
    igblast_base = 'https://raw.githubusercontent.com/nf-core/test-datasets/airrflow/database-cache/igblast_base.zip'

}
