Research Object Crate for NonSpliced RNAseq workflow

Original URL: https://workflowhub.eu/workflows/77/ro_crate?version=1

Workflow for NonSpliced RNAseq data with multiple aligners. Steps: - workflow_quality.cwl: - FastQC (control) - fastp (trimming) - bowtie2 (read mapping) - sam_to_sorted-bam - featurecounts (transcript read counts) - kallisto (transcript [pseudo]counts)

Author
Bart Nijsse, Jasper Koehorst
License
CC0-1.0

Contents

Main Workflow: NonSpliced RNAseq workflow
Size: 7251 bytes
Main Workflow Diagram: workflow-77-533f564586c3f2e4f924104184220bab21f3612d-diagram.svg
Size: 34088 bytes