Research Object Crate for Metagenomics Binning Workflow

Original URL: https://workflowhub.eu/workflows/64/ro_crate?version=9

Workflow for Metagenomics from raw reads to annotated bins. **Steps:** * workflow_quality.cwl: * FastQC (control) * fastp (quality trimming) * bbmap contamination filter * SPAdes (Assembly) * QUAST (Assembly quality report) * BBmap (Read mapping to assembly) * MetaBat2 (binning) * CheckM (bin completeness and contamination) * GTDB-Tk (bin taxonomic classification)

Author: Jasper Koehorst, Bart Nijsse
License: CC0-1.0

Main Workflow: Metagenomics Binning Workflow
Size: 13780 bytes

Main Workflow Diagram: workflow-64-d6fcbfaa5609d3aaa341a3b31bd3075f99b80df8-diagram.svg
Size: 61045 bytes

Research Object Crate for Metagenomics Binning Workflow

Contents