Research Object Crate for Metagenomics workflow

Original URL: https://workflowhub.eu/workflows/64/ro_crate?version=8

Workflow for Metagenomics from raw reads to annotated bins. Steps: - workflow_quality.cwl: - FastQC (control) - fastp (trimming) - Kraken2 (Taxonomic Read Classification - SPAdes (Assembly) - QUAST (Assembly quality report) - BBmap (Read mapping to assembly) - sam_to_bam (sam to indexed bam) - metabatContigDepths (jgi_summarize_bam_contig_depths) - MetaBat2 (binning)

Author: Jasper Koehorst, Bart Nijsse
License: notspecified

Main Workflow: Metagenomics workflow
Size: 11611 bytes

Main Workflow Diagram: workflow-64-06604059e37a63c5882f4e180ce1ea693ca96706-diagram.svg
Size: 51515 bytes

Research Object Crate for Metagenomics workflow

Contents