Research Object Crate for Analyses of shotgun metagenomics data with MetaPhlAn2

The aim of this workflow is to handle the routine part of shotgun metagenomics data processing on Galaxy Australia. The workflow is using the tools MetaPhlAn2 for taxonomy classification and HUMAnN2 for functional profiling of the metagenomes. The workflow is based on the Galaxy Training tutorial 'Analyses of metagenomics data - The global picture' (Saskia Hiltemann, Bérénice Batut) https://training.galaxyproject.org/training-material/topics/metagenomics/tutorials/general-tutorial/tutorial.html#shotgun-metagenomics-data. The how-to guide is available here: https://vmurigneu.github.io/shotgun_howto_ga_workflows/

Author

Valentine Murigneux, Mike Thang, Saskia Hiltemann, The workflow is based on the Galaxy Training tutorial Analyses of metagenomics data. Thank you to the Galaxy Australia team, Igor Makunin and Mike Thang for help with the workflow

License

CC-BY-4.0

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