Research Object Crate for ERGA HiFi+HiC Assembly+QC Hifiasm v2309 (WF2)

The workflow takes a trimmed HiFi reads collection, Forward/Reverse HiC reads, and the max coverage depth (calculated from WF1) to run Hifiasm in HiC phasing mode. It produces both Pri/Alt and Hap1/Hap2 assemblies, and runs all the QC analysis (gfastats, BUSCO, and Merqury). The default Hifiasm purge level is Light (l1).

Author

Diego De Panis, ERGA

License

MIT

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