Research Object Crate for ERGA Profiling HiFi v2309 (WF1)

Original URL: https://workflowhub.eu/workflows/603/ro_crate?version=1

The workflow takes a trimmed HiFi reads collection, runs Meryl to create a K-mer database, Genomescope2 to estimate genome properties and Smudgeplot to estimate ploidy. The main results are K-mer database and genome profiling plots, tables, and values useful for downstream analysis. Default K-mer length and ploidy for Genomescope are 21 and 2, respectively.

Author
Diego De Panis, ERGA
License
MIT

Contents

Main Workflow: ERGA Profiling HiFi v2309 (WF1)
Size: 42208 bytes
Main Workflow Diagram: Prof_hifi_2309.png
Size: 117463 bytes