# Research Object Crate for Use Public Resources to answer a biological question

Original URL: https://workflowhub.eu/workflows/494/ro_crate?version=1

## Learning Objectives - How to access genomic resource via its Python API - How to access image resource via its Python API - Relate image data to genomic data ## Diabetes related genes expressed in pancreas This notebook looks at the question **Which diabetes related genes are expressed in the pancreas?** Tissue and disease can be modified. Steps: - Query [humanmine.org](https://www.humanmine.org/humanmine), an integrated database of Homo sapiens genomic data using the intermine API to find the genes. - Using the list of found genes, search in the [Image Data Resource (IDR)](https://idr.openmicroscopy.org/) for images linked to the genes, tissue and disease. - Analyse the images found. ## Launch This notebook uses the [environment.yml](https://github.com/ome/EMBL-EBI-imaging-course-05-2023/blob/main/Day_4/environment.yml) file. See [Setup](https://github.com/ome/EMBL-EBI-imaging-course-05-2023/blob/main/Day_4/setup.md).

Author
  Jean-Marie Burel
License
  BSD-2-Clause

## Contents

Main Workflow: Use Public Resources to answer a biological question
Size: 2884598 bytes
Main Workflow Diagram: HumanMineIDR.png
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