Research Object Crate for Nanopore Guppy Basecalling Assembly Workflow

### - deprecated - Workflow for sequencing with ONT Nanopore, from basecalling to assembly. - Guppy (basecalling of raw reads) - MinIONQC (quality check) - FASTQ merging from multi into one file - Kraken2 (taxonomic classification) - Krona (classification visualization) - Flye (de novo assembly) - Medaka (assembly polishing) - QUAST (assembly quality reports) **All tool CWL files and other workflows can be found here:**
Tools: https://git.wur.nl/unlock/cwl/-/tree/master/cwl
Workflows: https://git.wur.nl/unlock/cwl/-/tree/master/cwl/workflows

Author

Bart Nijsse, Jasper Koehorst, Germán Royval

License

Apache-2.0

Contents