Research Object Crate for Racon polish with Illumina reads, x2

Assembly polishing subworkflow: Racon polishing with short reads Inputs: short reads and assembly (usually pre-polished with other tools first, e.g. Racon + long reads; Medaka) Workflow steps: * minimap2: short reads (R1 only) are mapped to the assembly => overlaps.paf. Minimap2 setting is for short reads. * overlaps + short reads + assembly => Racon => polished assembly 1 * using polished assembly 1 as input; repeat minimap2 + racon => polished assembly 2 * Racon short-read polished assembly => Fasta statistics Infrastructure_deployment_metadata: Galaxy Australia (Galaxy)

Author

Anna Syme

License

Apache-2.0

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