Research Object Crate for Data QC

Data QC step, can run alone or as part of a combined workflow for large genome assembly. * What it does: Reports statistics from sequencing reads. * Inputs: long reads (fastq.gz format), short reads (R1 and R2) (fastq.gz format). * Outputs: For long reads: a nanoplot report (the HTML report summarizes all the information). For short reads: a MultiQC report. * Tools used: Nanoplot, FastQC, MultiQC. * Input parameters: None required. * Workflow steps: Long reads are analysed by Nanoplot; Short reads (R1 and R2) are analysed by FastQC; the resulting reports are processed by MultiQC. * Options: see the tool settings options at runtime and change as required. Alternative tool option: fastp Infrastructure_deployment_metadata: Galaxy Australia (Galaxy)

Author

Anna Syme

License

Apache-2.0

Contents