BVSim: A Benchmarking Variation Simulator Mimicking Human Variation Spectrum

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Table of Contents

• Getting Started
• Installation
• Functions and Parameters
• Shared Parameters
• Human Genome
• Uniform Mode
• Complex SV Mode
• Uniform Parallel Mode
• Wave Mode
• • Requirements for the BED File
  • Generating a BED File for a Single Sample in Wave Mode
  • Job Submission for Wave Mode (Single Sample)
  • Generating BED Files for Multiple Samples in Wave Mode
  • Job Submission for Wave Mode (Multiple Samples)
  • Important Note on File Placement
  • Parameters for Wave Mode
• Wave Region Mode
• • Extract TR Regions and Generate the BED File
  • Job Submission for Wave Region Mode (Single Sample)
  • Parameters for Wave Region Mode
• Uninstallation

Getting Started