# Quality Control Report

## Number of reads that went through the quality control process.

{div[Reads]}

Step | Output
--- | ---
raw | the input reads
deduplicated | after (optional) deduplication step
filtered | trimmed, quality filtered
qc | final reads, contaminants removed

## Total number of reads/bases after QC

{div[Total_Reads]}
{div[Total_Bases]}

## Base quality values along reads

{div[quality_QC]}

## Read length

{div[Length]}

## Insert size

The size of the reads + the space between. Ideally, the paired-end reads don't overlap.

{div[Insert]}