Quality Control Report

Number of reads that went through the quality control process.

{div[Reads]}
Step Output
raw the input reads
deduplicated after (optional) deduplication step
filtered trimmed, quality filtered
qc final reads, contaminants removed

Total number of reads/bases after QC

{div[Total_Reads]}
{div[Total_Bases]}

Base quality values along reads

{div[quality_QC]}

Read length

{div[Length]}

Insert size

The size of the reads + the space between. Ideally, the paired-end reads don't overlap.

{div[Insert]}