{% set vars = {'is_first': True} %} {% for item in range(all_stats_dicts["NCBI_FCS_GX"]|length) %} {% set active_text = 'display: block' if vars.is_first else 'display: none' %}
{{ all_stats_dicts['NCBI_FCS_GX'][item]['hap'] }}
{%if all_stats_dicts['NCBI_FCS_GX'][item]['did_detect_contamination'] %}

Contamination detected. Subsequent pipeline modules are skipped.

{{ all_stats_dicts['NCBI_FCS_GX'][item]['report_table_html'] }}
{% else %}

No contamination detected.

{% endif %} {%if all_stats_dicts['NCBI_FCS_GX'][item]['is_wrong_div'] %}

Warning: Asserted div ({{ all_stats_dicts['NCBI_FCS_GX'][item]['report_meta_data'][1]["run-info"]["asserted-div"] }}) is not present in the inferred div(s) ({{ all_stats_dicts['NCBI_FCS_GX'][item]['report_meta_data'][1]["run-info"]["inferred-primary-divs"] }}). Either the tax ID is incorrect or the sample is predominantly contamination.

{% endif %}
Taxonomy

Bogus, Repeat, Low-coverage and Inconclusive results are labelled as No hits.

{% if vars.update({'is_first': False}) %} {% endif %} {% endfor %}