BUSCO estimates the completeness and redundancy of processed genomic data based on universal single-copy orthologs. GFFREAD is used to obtain protein sequences from assembly FASTA and annotation GFF3 files.

Reference:

Manni M., Berkeley M.R., Seppey M., Simao F.A., Zdobnov E.M. 2021. BUSCO update: novel and streamlined workflows along with broader and deeper phylogenetic coverage for scoring of eukaryotic, prokaryotic, and viral genomes. arXiv:2106.11799 [q-bio] [Internet]. Available from: arxiv.org/abs/2106.11799

Pertea G, Pertea M. GFF Utilities: GffRead and GffCompare. F1000Res. 2020 Apr 28;9:ISCB Comm J-304. doi: 10.12688/f1000research.23297.2. PMID: 32489650; PMCID: PMC7222033.

Version: {{ all_stats_dicts['VERSIONS']['BUSCO_ANNOTATION']['busco'] }} (BUSCO), {{ all_stats_dicts['VERSIONS']['EXTRACT_PROTEINS']['gffread'] }} (GFFREAD)

{% include 'busco_gff/dropdown.html' %} {% include 'busco_gff/summary_contents.html' %} {% include 'busco_gff/report_contents.html' %}